Wheeler Lab
    Join the lab!

    Preparing samples for Plasmidsaurus sequencing

    Created
    Feb 7, 2024 1:28 PM
    Status
    Complete
    Category
    Lab tasks

    Materials

    • Samples to be sequenced
    • PCR tube (for one samples) or PCR strip tubes (for multiple samples)
    • Parafilm
    • 15 mL conical tube

    Protocol

    1. Quantify the concentration of DNA in each sample using the Qubit BR dsDNA kit.
    2. Dilute sample so that there is 30 ng/µL concentration with a volume of 10 uL into a PCR tube.
      1. You need 300 ng of DNA in the 10 µL so you need to find the volume needed from the sample.
        1. E.g., Qubit output = 42.6 ng/µL to find the volume containing 300 ng you divide 300n g by the concentration and will get the volume of sample needed = 7.04 µL
      2. The remaining volume to get to 10 µL should be water.
      3. 💡
        For one sample, the DNA should be diluted in a single PCR tube. For multiple samples, you should use a PCR strip tube.
    3. Ask Dr. Wheeler to submit the sequencing order on the Plasmidsaurus website.
    4. Label the tube (or first tube of the strip tube) with the 3-character code indicated on the receipt.
      1. If you are shipping more than one tube, label the first tube with the 3-character code and on the second tube write the strip number (if submitting multiple strips).
      2. Do not add anything else to the labels.
      3. image
        image
    5. Package the samples by placing a piece of Parafilm around the tubes to ensure that they do not open during shipment. Then put the samples into a protective box.
      1. If one sample, place it in a 15 mL tube.
      2. If multiple samples use a small box.
      3. image
        image
    6. Ask Dr. Wheeler to prepare a FedEx shipping label and fill out the mail services eForm to request a pickup.
    7. Place the prepared samples in a FedEx envelope with the shipping label and leave the biology office for pickup by mail services.
    Wheeler Lab

    Advancing knowledge and equity in parasitology

    GitHubLinkedInX